Infectious Disease Modelling with a focus on Malaria Vaccination

Welcome to the MRC Unit The Gambia and MRC GIDA Imperial College London workshop Infectious Disease Modelling with a focus on Malaria.

You will be using the interface to explore and understand the basics of infectious disease modelling.

Materials

Practical 1: Modelling vaccination

Go to app

Practical 2: Introduction to the Ross-MacDonald malaria model (Recap)

This is a recap from the Practical 3: Simple model of malaria from the 2023 workshop

Go to app

Supporting files

Practical 3: Malaria Vaccination

Basic model

Vaccine coverage example

2023 Short Course Materials

Practical 2: Introduction to R0 and the odin interface

Go to app

  1. Exponential growth
  2. SIR closed
  3. SIR open
  4. SIR open with R0
  5. SEIRS


Help

The following resources were compiled for the short course: Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases. They are applicable here.

A general help file for writing model (odin) code and navigating the interface can be found here.

For transitioning from this interface into R and Rstudio we have compiled a list of useful resources and a simple example to start the transition