Infectious Disease Modelling and Analytics for Pandemic Preparedness (IDMAPP): A focus on Latin America - 2025

Welcome to the IDMAPP-LATAM short course! Use the links below to navigate to the respective day's practical. At the end of each day, additional resources including model answers for each practical will be made available.

Week 1

Introduction to R0 and the wodin programming environment

Go to app

Supporting files

Estimating key parameters from an outbreak of COVID and influenza

Go to app

Supporting files

Estimating disease severity

Supporting files

  • Code and data
  • solutions.qmd

    • Stochasticity

    There are three apps for this session

    1. Birth and death model
    2. SIS model
    3. SIR model

    Modelling vaccination

    Go to app

    Modelling vector-borne diseases

    There are two apps for this session

    1. Simple model
    2. Latent model

    Week 2 projects

    Respiratory pathogen outbreak

    Go to app

    Supporting files

    Vector-borne pathogen outbreak

    Simple model

    Complex model

    Fitting exercise

    Supporting files

    Help

    A general help file for writing model code in odin can be found here.

    For transitioning from this interface into R and Rstudio we have compiled a list of useful resources and a simple example to start the transition